PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G15270.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CPP
Protein Properties Length: 364aa    MW: 40351.6 Da    PI: 6.49
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G15270.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR439e-145794340
              TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                     +k+C+CkkskClk+YC Cfa+g++Cse+C C  C Nk+
  LPERR12G15270.2 57 CKSCSCKKSKCLKLYCVCFASGSHCSESCGCYPCYNKS 94
                     799*********************************97 PP
2TCR46.76.2e-15133168439
              TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN 
  LPERR12G15270.2 133 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 168
                      79*********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-95596IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163428.7456170IPR005172CRC domain
PfamPF036382.2E-95893IPR005172CRC domain
SMARTSM011141.2E-13130171IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.1E-11133167IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MASSGDPSRV VVPRNFRLLE ELERGEKGIG DGSVSYGMDD ADDIYMRRKA DEGEGGCKSC  60
SCKKSKCLKL YCVCFASGSH CSESCGCYPC YNKSIHGVPR SAPALPLKAV QTSEAGHDSL  120
EQIIRSPMDL VRRKCTCKKS GCLKKYCDCY QGGAGCSINC KCDDCKNPYG RKVGVILDGK  180
NILAGPTPNE RNGTEADSSD DEEDDYYMNR PLSPVSPSPV SRESSFQQET LVGVEVQTMN  240
GHLYPKPITQ VRPDSWQITR RPTDEVRGEA WGYLRRPSED GTSDVMEGHA DPKFPRDNKL  300
PDNHVDRYSI PRCIEVMNGM ADLSPIEKSL APDVFLDPSN REIFLSLTVD IRTMWLKRKM  360
SSLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G15270.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086640.0AK108664.1 Oryza sativa Japonica Group cDNA clone:002-148-G02, full insert sequence.
GenBankCU4067180.0CU406718.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618281.10.0protein lin-54
TrEMBLA0A0D9Y1850.0A0A0D9Y185_9ORYZ; Uncharacterized protein
STRINGLPERR12G15270.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.17e-25TESMIN/TSO1-like CXC 2