PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR12G15290.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

CPP

Protein Properties

Length: 729aa MW: 78322 Da PI: 6.9176

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR12G15290.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.6	7.6e-16	454	493	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cs+ C+C++C Nk + LPERR12G15290.1 454 SCKHCSCKKSKCLKLYCECFHAGVFCSDPCSCQGCLNKPS 493 689**********************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.2E-16	453	494	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	17.706	454	546	IPR005172	CRC domain
Pfam	PF03638	6.2E-12	456	491	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence Send to blast
MDTPDRAPRA ATAAAVEDSP VFNFINSLSP IPPPKPSDSA HNVQLFKSSD LAPVSSIFAS 60 PHVNPAKESK LLIRDDSVQL SQESHSPNSV RTRTGATSSI RMIRCKNIVS ENCSIACCLN 120 ESNSSKTSQS IQLCGGSAES DKNQNSDGKK DLTTEQDSTN LEFVLLDQNG PEKMDSLLLG 180 NIVSDNQLSE QQKDGLGSFD AVYMIAHQPN SDMLRLAPPF ESETQLVSET LETDDVYCES 240 LLNGGPSGSH IQNSAPDPHL YWAGAVEGSA TDYTPQMLPG ACQSQLVPND QISNKLNEPS 300 DYMPIDQNVS SQNLRGMRRR CLFNEKAGAS NKGVKNTPVR HSTNLTTPRR KTSSSDNKLK 360 ILRTPPCALP GIGLHLNALT AVPKEKAVIH NETQSSLNQA SNVLSAVGSS PPIADLHTVN 420 DDSSQATMVA YVDESSQGSP KKKRHKFDNG DGTSCKHCSC KKSKCLKLYC ECFHAGVFCS 480 DPCSCQGCLN KPSNMEAVLS IREQIESRNP LAFAPKVIRT EPGQELAGGV GCSVNCRCEG 540 CKNAFGRREV EGVTLLSIED AKRGCREKNE GMKEETIDND KQLVIYQDST NLTPAESVLT 600 TPSVADCRPL AALPPLSSKK PRSSTKLGGY SSRLEGPLKS DIVLSPFESY AEMMLGDGTS 660 NTLKGELSPQ NSVKVVSPNK KRVSPPRIGT GLSPICKSGR KLILKSIPSF PSLGGDITNE 720 NPNTSSLAP

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence Send to blast

MDTPDRAPRA ATAAAVEDSP VFNFINSLSP IPPPKPSDSA HNVQLFKSSD LAPVSSIFAS  60
PHVNPAKESK LLIRDDSVQL SQESHSPNSV RTRTGATSSI RMIRCKNIVS ENCSIACCLN  120
ESNSSKTSQS IQLCGGSAES DKNQNSDGKK DLTTEQDSTN LEFVLLDQNG PEKMDSLLLG  180
NIVSDNQLSE QQKDGLGSFD AVYMIAHQPN SDMLRLAPPF ESETQLVSET LETDDVYCES  240
LLNGGPSGSH IQNSAPDPHL YWAGAVEGSA TDYTPQMLPG ACQSQLVPND QISNKLNEPS  300
DYMPIDQNVS SQNLRGMRRR CLFNEKAGAS NKGVKNTPVR HSTNLTTPRR KTSSSDNKLK  360
ILRTPPCALP GIGLHLNALT AVPKEKAVIH NETQSSLNQA SNVLSAVGSS PPIADLHTVN  420
DDSSQATMVA YVDESSQGSP KKKRHKFDNG DGTSCKHCSC KKSKCLKLYC ECFHAGVFCS  480
DPCSCQGCLN KPSNMEAVLS IREQIESRNP LAFAPKVIRT EPGQELAGGV GCSVNCRCEG  540
CKNAFGRREV EGVTLLSIED AKRGCREKNE GMKEETIDND KQLVIYQDST NLTPAESVLT  600
TPSVADCRPL AALPPLSSKK PRSSTKLGGY SSRLEGPLKS DIVLSPFESY AEMMLGDGTS  660
NTLKGELSPQ NSVKVVSPNK KRVSPPRIGT GLSPICKSGR KLILKSIPSF PSLGGDITNE  720
NPNTSSLAP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR12G15290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073942	0.0	AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620275.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0D9Y188	0.0	A0A0D9Y188_9ORYZ; Uncharacterized protein
STRING	LPERR12G15290.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12746	26	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	6e-47	Tesmin/TSO1-like CXC domain-containing protein