PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G16560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 320aa    MW: 33176.2 Da    PI: 7.7391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G16560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.4e-15165211455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  LPERR12G16560.1 165 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVKELQ 211
                      5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.993161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-19165220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-18165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-13166211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.50E-16166215No hitNo description
SMARTSM003534.2E-17167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDDSSFFMQW AMDTLHQLPS DTAAAAYATD AGVDAAAGAF PSLQALRNSG AGGFRDLTVQ  60
VDQQVHRASS WSSSDSPGAA AAAGGWSPSP HVITGGGGAW GSRPMSWNFS AASAHPTAEE  120
SGGGAPAPAV AMETATARAA AAAATGKKGG GSSSAAAAAP GYVQDHIIAE RRRREKINQR  180
FIELSTVIPG LKKMDKATIL GDAVKYVKEL QEKVKTMEDS SGSRSAMEVV RKPCRLQHSG  240
EDNNGGEGSS SSTTAALRLP EIEARLSEKS VLLRIHCGNS RGMLVRLLSE VEDLKLGITH  300
TSVMPFPAST VIITITAKAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14165231875Transcription factor MYC2
5gnj_B2e-14165231875Transcription factor MYC2
5gnj_E2e-14165231875Transcription factor MYC2
5gnj_F2e-14165231875Transcription factor MYC2
5gnj_G2e-14165231875Transcription factor MYC2
5gnj_I2e-14165231875Transcription factor MYC2
5gnj_M2e-14165231875Transcription factor MYC2
5gnj_N2e-14165231875Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERRRRE
2170175RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G16560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643402e-44BT064340.1 Zea mays full-length cDNA clone ZM_BFc0160K20 mRNA, complete cds.
GenBankKJ7268832e-44KJ726883.1 Zea mays clone pUT3424 bHLH transcription factor (bHLH115) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618735.11e-124transcription factor NAI1 isoform X2
TrEMBLA0A0D9Y1R00.0A0A0D9Y1R0_9ORYZ; Uncharacterized protein
STRINGLPERR12G16560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-35bHLH family protein