PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G17030.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 298aa    MW: 33457.7 Da    PI: 6.287
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G17030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95e-1516107199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+l     + ++ l+lp kfa++          +tl d+ grsW+v+l ++  + +++ ++ W++Fv+an+L  g ++vF +    + +l v
  LPERR12G17030.1  16 FFKIL--LPGTFESTLCLPPKFAARLAAA-----AVTLIDPAGRSWDVELGHNDDQTACFAGTAWRSFVRANRLVPGHMLVFDRRPGPGLHLAV 102
                      77888..45555667********999644.....6***************88888888*************************66448888888 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       +f++
  LPERR12G17030.1 103 DMFDH 107
                      88876 PP
2B345.51.4e-142032901499
                      T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE....E-SS.SEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk....ldgr.sefelvvkvfrk 99 
                      ++l l k+f+++ g  + +s++l+l++ ++   Wev++  + ++++ ++ +GW +Fv++n++++ D++vFk    +    + ++l v+v+r+
  LPERR12G17030.1 203 RLLDLTKSFCDRVGWTSSRSVELSLQQqRRQGPWEVRV--KVSGKGGMMCGGWMQFVNDNNICVHDTCVFKppprH--LlHHGSLQVHVLRR 290
                      568899*******99999********966679******..77776767889********************65431..23556667776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-1414110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.09614108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-1414110IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-816108IPR003340B3 DNA binding domain
CDDcd100173.71E-1316106No hitNo description
PfamPF023626.0E-1216106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-14188290IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.017192293IPR003340B3 DNA binding domain
PfamPF023621.6E-10204290IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-11204289IPR015300DNA-binding pseudobarrel domain
CDDcd100173.31E-7205289No hitNo description
PROSITE profilePS508639.643205291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAKGEGDGDG VHRQKFFKIL LPGTFESTLC LPPKFAARLA AAAVTLIDPA GRSWDVELGH  60
NDDQTACFAG TAWRSFVRAN RLVPGHMLVF DRRPGPGLHL AVDMFDHSGC LKDDDADDDD  120
HQIDDEDDDD DEMESGNAAA WRKAFAGGMK KKKEKKRKRS RSLSPPPAAD MTGSCGQDDQ  180
QQQQEEEEEE ELQIDIVRPY QLRLLDLTKS FCDRVGWTSS RSVELSLQQQ RRQGPWEVRV  240
KVSGKGGMMC GGWMQFVNDN NICVHDTCVF KPPPRHLLHH GSLQVHVLRR RTNIITIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G17030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9Y1W80.0A0A0D9Y1W8_9ORYZ; Uncharacterized protein
STRINGLPERR12G17030.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168021012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.16e-08B3 family protein