PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0037529.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family AP2
Protein Properties Length: 420aa    MW: 46156.3 Da    PI: 8.4671
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0037529.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.8e-17138187155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Lj0g3v0037529.1 138 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 187
                      78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16138195IPR016177DNA-binding domain
PfamPF008471.8E-9138187IPR001471AP2/ERF domain
PROSITE profilePS5103217.82139195IPR001471AP2/ERF domain
CDDcd000184.52E-11139194No hitNo description
SMARTSM003804.6E-31139201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-17139195IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-6230273IPR016177DNA-binding domain
CDDcd000181.50E-12230273No hitNo description
SMARTSM003807.7E-12231279IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MLDLNLNAES THNDDSFLEE AVSSGTSNSS IVNAEGSSNG VGDEDSCSTR AAGHVITFDF  60
GILKVEGVGS DVAAATRELF PVIAGSWPVP TFVAKKSVVD LSLDHHRSEN GEVKVVQVPQ  120
PQQPQVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR  180
AAIKFRGLDA DINFNLVDYE DDLKQMKNLS KEEFVHILRR HSTGFSRGSS KYRGVTLHKC  240
GRWEARMGQF LGKKAYDKAA LKCNGREAVT NFEPCTYESE MKPEAINEGG NHNLDLNLGM  300
ATPGHGPKDN RGHLQSQPVP YNMHPGRSSK METNANSVIG DPSLKRLVVT QDRPSVWNST  360
YSRFFPTEER AERIGLDPSK GHSNWAWQTH GQVSGATPVP PFSSAASSGF SISATFPPPT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0037529.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434100.0BT143410.1 Lotus japonicus clone JCVI-FLLj-21N13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028190359.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-109RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLI3SSG20.0I3SSG2_LOTJA; Uncharacterized protein
STRINGGLYMA13G40470.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-104related to AP2.7