PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0057319.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 90aa    MW: 10599.1 Da    PI: 10.817
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0057319.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-114681340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++eE +++++a +++G++ Wk++a+ +  +R+ +++
  Lj0g3v0057319.1 46 QWSKEELQRFYEAYRKYGKE-WKKVASAVR-NRSIEMV 81
                     7*******************.*********.***9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.73E-124188IPR009057Homeodomain-like
PROSITE profilePS5129311.1384290IPR017884SANT domain
SMARTSM007170.00694389IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-74582IPR009057Homeodomain-like
PfamPF002492.8E-104682IPR001005SANT/Myb domain
CDDcd001672.87E-54781No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MAPTKKSRSV NKRLSNSNDL SPEKDGVNSN KYKLRKKKLS DKLGSQWSKE ELQRFYEAYR  60
KYGKEWKKVA SAVRNRSIEM VEALYNLNRV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0057319.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231534.11e-44protein ALWAYS EARLY 2
SwissprotQ6A3319e-29ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBLA0A371HLU92e-43A0A371HLU9_MUCPR; Protein ALWAYS EARLY 3 (Fragment)
STRINGAES613722e-43(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2106422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-21DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]