PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0059169.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 290aa    MW: 32438.6 Da    PI: 5.151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0059169.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-2098148155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a++k++g
  Lj0g3v0059169.1  98 PRYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAATAYDKAALKFRG 148
                      68********.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.05E-3598157No hitNo description
PfamPF008471.7E-1398148IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2399157IPR016177DNA-binding domain
SMARTSM003802.0E-3799162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3399157IPR001471AP2/ERF domain
PROSITE profilePS5103225.27799156IPR001471AP2/ERF domain
PRINTSPR003671.4E-11100111IPR001471AP2/ERF domain
PRINTSPR003671.4E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MIAQVNNKNK KVDPRRDGKF ALYSEASEAK EEDELFDAYN YASSDTDMSA MVSALAQVMG  60
TTNPNQHMVQ STSFPVSTMV NEEPQPQPLL DQEITKKPRY RGVRQRPWGK WAAEIRDPKK  120
AARVWLGTFE TAEDAATAYD KAALKFRGTK AKLNFPERIQ GNTDASYVVQ QGSGSRNVIY  180
TNDATTSASS AIIQHAHAHD INALPPSLST TNEHDHQVFP NLFQYAQILS SDDAELPYYT  240
SHLFNQQQLP FSSQFSTNLS STSSPSSYFY NQQQQQHDEE GDDVTMSSSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-27100159363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0059169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1457750.0BT145775.1 Lotus japonicus clone JCVI-FLLj-20A2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352357.15e-95ethylene-responsive transcription factor ERF113
TrEMBLI3SZ771e-146I3SZ77_LOTJA; Uncharacterized protein
STRINGGLYMA08G28835.13e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.16e-35ERF family protein