PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0063509.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 211aa    MW: 23807.8 Da    PI: 10.8327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0063509.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.7e-154084655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     n+ Er+RRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  Lj0g3v0063509.1 40 NQSERKRRDRINQRLKALQKLVPNA-----SKTDKASMLDEVINYLKQLQ 84
                     789*********************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.4123483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-124084IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-164089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1740101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-154094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.75E-144088No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRSIRLVTLD RMSLNKMTET AKQKHAKPTQ KGEIELLPLN QSERKRRDRI NQRLKALQKL  60
VPNASKTDKA SMLDEVINYL KQLQAQIQIM NMTNLPQMMV PLAMQQQLQM SMQLARIGAM  120
GMVNMNHLVR PTSIMMPASL VQPRAPASSN PEPSSSGINA SIPLPNPYCA NLTQLVNMEI  180
LNNMSGLYRQ QMSQKTQNNQ SLEQQLDTNA P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0063509.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027333876.14e-58transcription factor UNE10-like isoform X1
RefseqXP_027333885.14e-58transcription factor UNE10-like isoform X2
TrEMBLA0A371E8Y62e-57A0A371E8Y6_MUCPR; Transcription factor PIF7 (Fragment)
STRINGEOY219716e-50(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.16e-25bHLH family protein