PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0065479.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 286aa MW: 32237.5 Da PI: 9.6544

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0065479.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	7e-06	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Lj0g3v0065479.1 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP
2	zf-C2H2	13.3	0.00025	172	194	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ + H + + Lj0g3v0065479.1 172 WKCDKCSKKYAVQSDWRAHYKIC 194 58*****************9987 PP
3	zf-C2H2	10.6	0.0018	202	220	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++ +H + Lj0g3v0065479.1 202 DCGTIFSRRDSFITHRAFC 220 8**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.2E-6	95	118	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.05E-7	95	118	No hit	No description
SMART	SM00355	0.017	96	118	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	96	118	IPR007087	Zinc finger, C2H2
Pfam	PF12171	4.0E-5	96	118	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	137	167	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.9E-4	160	193	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.05E-7	167	192	No hit	No description
SMART	SM00355	92	172	192	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MSNITSCDSG SFSTENNRGD NIAVKKQQPE IFGQFYSPHS HTSTTTTTTT NKSNGSNTNL 60 QPSAPAKRKR SLPGNPDPSA EVIALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRTTA EVRKRVYVCP EPSCVHHSPA RALGDLTGIK KHFCRKHGEK KWKCDKCSKK 180 YAVQSDWRAH YKICGTKEYK CDCGTIFSRR DSFITHRAFC DALSEENHKA NEQGQLPPNI 240 MQPIPINTNP NPQMPHGALE FNHSDQKHPS PLPLPLPHEL NIPMFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	168	229	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-33	168	229	3	64	Zinc finger protein JACKDAW
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.13760	0.0	cell culture\| pod\| protoplast

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269\|PubMed:21571950}.
Uniprot	TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269\|PubMed:21571950}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0065479.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014514195.1	1e-151	protein indeterminate-domain 2
Swissprot	Q9LVQ7	1e-111	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A1S3V7C7	1e-150	A0A1S3V7C7_VIGRR; protein indeterminate-domain 2
STRING	XP_007144938.1	1e-149	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	2e-99	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]