PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0070699.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 208aa    MW: 22800.2 Da    PI: 8.8169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0070699.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.3e-162577156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g+
  Lj0g3v0070699.1 25 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRGA 77
                     57****************988532...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.00E-132586No hitNo description
PfamPF008476.7E-112576IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-182586IPR016177DNA-binding domain
PROSITE profilePS5103219.0722684IPR001471AP2/ERF domain
SMARTSM003801.7E-312690IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-192685IPR001471AP2/ERF domain
PRINTSPR003672.1E-52738IPR001471AP2/ERF domain
PRINTSPR003672.1E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MQHAGKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE  60
EEAAEAYDIA AIKFRGASAV TNFEMSRYDV ETILQNSLPV GGASKRLKLS QESEQKAPPV  120
SSSEQPHSTN LSISSINFST IDPVAAMSPP YDPSSAFYPH NNLFYHFHPT STVNATAESA  180
ANFTNAPTPL SSLPPGSEFF IWPNHQSH
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0070699.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014626720.18e-92AP2-like ethylene-responsive transcription factor AIL7 isoform X3
RefseqXP_027362839.12e-91LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ8LSN27e-56BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0B2S0343e-92A0A0B2S034_GLYSO; AP2-like ethylene-responsive transcription factor PLT1
TrEMBLK7MSE31e-89K7MSE3_SOYBN; Uncharacterized protein
STRINGGLYMA18G29400.22e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-54AINTEGUMENTA-like 6