PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0072079.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 246aa    MW: 28145.2 Da    PI: 4.8002
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0072079.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.8e-194091556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++f++eq++ Le++Fe+++ +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Lj0g3v0072079.1 40 RRFSDEQIKSLESMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 91
                     68*************************************************9 PP
2HD-ZIP_I/II117.57.3e-3839129393
      HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       rr+s+eq+k+LE++Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y++L ++y++l+++ e+L+ke+++L  +l++
  Lj0g3v0072079.1  39 ARRFSDEQIKSLESMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSMLSSNYNNLASKYEALKKEKQTLLIQLQK 129
                      69***********************************************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-191895IPR009057Homeodomain-like
SMARTSM003897.8E-163197IPR001356Homeobox domain
CDDcd000861.30E-153294No hitNo description
PROSITE profilePS5007117.8643393IPR001356Homeobox domain
PfamPF000464.2E-164091IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1940101IPR009057Homeodomain-like
PRINTSPR000311.0E-56473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000311.0E-57389IPR000047Helix-turn-helix motif
PfamPF021838.1E-1493134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLNTMEYTYS AEETADAETY TTSSSTQPVS MRKKRNKNAR RFSDEQIKSL ESMFESESRL  60
EPRKKLQLAR ELGLQPRQVA IWFQNKRARW KSKQLEREYS MLSSNYNNLA SKYEALKKEK  120
QTLLIQLQKL SDLMKTPLEK SESSTQGKAA NSMDSESENG ATIKCEPEVK PSLSMERSEH  180
VLGVLSDDDT STKVEYIGLE DDEHGLLNFA DQADGSLTSP EDWGGFGSND FLGHSSSDYQ  240
WWDFWS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0072079.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335976.11e-131homeobox-leucine zipper protein ATHB-7-like
SwissprotP468971e-66ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A371FBD31e-127A0A371FBD3_MUCPR; Homeobox-leucine zipper protein ATHB-7
STRINGGLYMA16G02390.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-68homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]