PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0074419.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 162aa    MW: 18686.4 Da    PI: 5.7066
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0074419.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31101159159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      l+Dg++WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver+++d ++v++tYeg H+h+
  Lj0g3v0074419.1 101 LNDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDNDDSRYVITTYEGMHTHP 159
                      58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-3387160IPR003657WRKY domain
SuperFamilySSF1182902.09E-2894159IPR003657WRKY domain
PROSITE profilePS5081130.06796161IPR003657WRKY domain
SMARTSM007744.5E-37101160IPR003657WRKY domain
PfamPF031062.6E-25102159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MAERNPRPSS DYSPDSDLTS QWPNFELSEY LEFDDNHWLD DDREESFASK HVPNQVFQAN  60
EVGDFGGGGS NFEGSSRTID KNIKGARERV AFKTKSEVEI LNDGFKWRKY GKKMVKNSPN  120
PRNYYRCSVE GCPVKKRVER DNDDSRYVIT TYEGMHTHPS SC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-2589158271WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0074419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1423300.0BT142330.1 Lotus japonicus clone JCVI-FLLj-5P19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027333606.14e-67probable WRKY transcription factor 50
TrEMBLI3SPD21e-118I3SPD2_LOTJA; Uncharacterized protein
STRINGAES591651e-65(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-41WRKY DNA-binding protein 50