PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0075069.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 155aa    MW: 17229.7 Da    PI: 5.6008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0075069.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-191869256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+G+r+++ +g+++AeIrdp+     +r++lg+f+tae+Aa+a++aa+  ++g+
  Lj0g3v0075069.1 18 RYRGIRRRP-WGKFAAEIRDPTRK--GARIWLGTFDTAEQAARAYDAAAFHFRGH 69
                     69*******.**********8542..4***********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.61E-201877No hitNo description
PfamPF008471.4E-131869IPR001471AP2/ERF domain
SMARTSM003808.7E-351882IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-231877IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-321878IPR001471AP2/ERF domain
PROSITE profilePS5103225.5671876IPR001471AP2/ERF domain
PRINTSPR003671.4E-111930IPR001471AP2/ERF domain
PRINTSPR003671.4E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MEAERPSGSN GNNNGEVRYR GIRRRPWGKF AAEIRDPTRK GARIWLGTFD TAEQAARAYD  60
AAAFHFRGHR AILNFPNEYQ APPDAVNSYS LQMPLSAPSH ASNSSSSYSG GDGNNGIVKA  120
EPSGEMQFGD DHSFELEYFD SKLLEDLLQD DRYGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2818791475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0075069.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238476.14e-53uncharacterized protein LOC100500462
RefseqXP_006593380.14e-53uncharacterized protein LOC100500462 isoform X1
SwissprotQ9LTC52e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLC6T1T99e-52C6T1T9_SOYBN; Uncharacterized protein
STRINGGLYMA13G18400.11e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-29ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]