PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0077969.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 190aa    MW: 21062.2 Da    PI: 4.8029
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0077969.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.51e-42201191100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+l
  Lj0g3v0077969.1  20 PCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQL 113
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++e
  Lj0g3v0077969.1 114 AKAHAE 119
                      **9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.15319120IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-4220117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MESDTVTNTS PISPQVVMSP CAACKILRRR CAEKCVLAPY FPPTEPAKFT IAHRVFGASN  60
IIKFLQELPE SQRADAVTSM VYEAGARIRD PVYGCAGAIC QLQKQVNELQ AQLAKAHAEL  120
VNMQLQQANL MALICMEKMV ETPMQESPPQ KSVDNFFISS PSSSSDYQND LNFFEENITG  180
LNSLWEPLLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-43101222113LOB family transfactor Ramosa2.1
5ly0_B3e-43101222113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0077969.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971751e-116BT097175.1 Soybean clone JCVI-FLGm-21N19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542002.11e-108LOB domain-containing protein 1
RefseqXP_028188659.11e-108LOB domain-containing protein 1-like
SwissprotQ9SK083e-77LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A445IDF41e-106A0A445IDF4_GLYSO; LOB domain-containing protein 11
TrEMBLK7M3861e-106K7M386_SOYBN; Uncharacterized protein
STRINGGLYMA13G40370.21e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-76LOB domain-containing protein 11