PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0089119.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 93aa    MW: 10347.9 Da    PI: 10.69
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0089119.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.2e-092468153
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                     s++ GVr+++ +g ++AeIr         + +lg+f  +   aka+++ +k+l
  Lj0g3v0089119.1 24 SKFEGVRRRP-SGNFAAEIRG-------VKLWLGTFKNELNVAKAYENKKKEL 68
                     79********.7******988.......99********99*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-42468IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-72470IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-112569IPR001471AP2/ERF domain
SMARTSM003800.00662571IPR001471AP2/ERF domain
PROSITE profilePS5103212.5232584IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MDCRKVVDVV PIPCSSKRKK EKTSKFEGVR RRPSGNFAAE IRGVKLWLGT FKNELNVAKA  60
YENKKKELQH ERLLASASDD TNKSSKGGNV SGP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0089119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-12ethylene response factor 1