PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0090079.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

M-type_MADS

Protein Properties

Length: 108aa MW: 12412.5 Da PI: 10.1112

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0090079.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.2	7e-21	20	67	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i k +q+tfskRr ++KKA+EL++LCd+++a+++fs+ gkl+ + Lj0g3v0090079.1 20 KIVKKEYKQITFSKRRPVLFKKASELCILCDVQIAIVVFSPGGKLFCF 67 57778889*************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.558	11	71	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.0E-23	11	70	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-25	12	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-17	13	33	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-21	20	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-17	33	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-17	48	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MDMLNQEKKT TGHKNIEIKK IVKKEYKQIT FSKRRPVLFK KASELCILCD VQIAIVVFSP 60 GGKLFCFGHP NPKTVITRYL NGTTSEDSEP GKPRPMPSTY EGYNKRYE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	4e-16	12	106	1	90	Myocyte-specific enhancer factor 2A
3kov_B	4e-16	12	106	1	90	Myocyte-specific enhancer factor 2A
3kov_I	4e-16	12	106	1	90	Myocyte-specific enhancer factor 2A
3kov_J	4e-16	12	106	1	90	Myocyte-specific enhancer factor 2A
3p57_A	4e-16	12	106	1	90	Myocyte-specific enhancer factor 2A
3p57_B	4e-16	12	106	1	90	Myocyte-specific enhancer factor 2A
3p57_C	4e-16	12	106	1	90	Myocyte-specific enhancer factor 2A
3p57_D	4e-16	12	106	1	90	Myocyte-specific enhancer factor 2A
3p57_I	4e-16	12	106	1	90	Myocyte-specific enhancer factor 2A
3p57_J	4e-16	12	106	1	90	Myocyte-specific enhancer factor 2A
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269\|PubMed:18334668}.
Uniprot	TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269\|PubMed:18334668}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0090079.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027367484.1	1e-42	agamous-like MADS-box protein AGL61
Swissprot	Q9FKK2	5e-23	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A371E6Z0	2e-38	A0A371E6Z0_MUCPR; Agamous-like MADS-box protein AGL61 (Fragment)
STRING	AES84416	3e-34	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	3e-21	AGAMOUS-like 62

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]