PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0091669.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 158aa    MW: 17373.7 Da    PI: 7.2138
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0091669.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-112351247
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +v+++k+lG++ W++Ia ++  gRt++++k++w+ +
  Lj0g3v0091669.1  2 IVKLHKLLGNR-WSLIAGRLA-GRTANDVKNYWNCH 35
                     79*********.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-14136IPR009057Homeodomain-like
SMARTSM007170.0024138IPR001005SANT/Myb domain
PROSITE profilePS5129419.128140IPR017930Myb domain
CDDcd001678.05E-9136No hitNo description
SuperFamilySSF466896.71E-10249IPR009057Homeodomain-like
PfamPF002498.5E-9233IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MIVKLHKLLG NRWSLIAGRL AGRTANDVKN YWNCHLSKKL NAQVVDQEKH MVTNIDVIKP  60
QPAGNVIIGT SSISSKRSQL GELSPSPPPA APHHQSTGII FSPTFDGGHG QSQMLELEED  120
HNMCSYLDQQ GLVGMLPMEL QFDEVKAMSN GQNSSSQW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0091669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1360430.0BT136043.1 Lotus japonicus clone JCVI-FLLj-18L10 unknown mRNA.
GenBankBT1385800.0BT138580.1 Lotus japonicus clone JCVI-FLLj-7C5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602623.12e-45transcription factor MYB90
RefseqXP_028213768.12e-45transcription factor MYB90-like
TrEMBLI3SDN31e-112I3SDN3_LOTJA; Uncharacterized protein
STRINGGLYMA18G41520.18e-45(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-21myb domain protein 113