PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0101599.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-X1
Protein Properties Length: 959aa    MW: 105234 Da    PI: 8.0532
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0101599.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.44.6e-06297314118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H C ++CH+G C +C
  Lj0g3v0101599.1 297 CGNHACTETCHPGSCAEC 314
                      *****************9 PP
2zf-NF-X116.91.3e-05355372118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H+C++ CH  +C pC
  Lj0g3v0101599.1 355 CGMHQCKQACHAWDCAPC 372
                      ****************** PP
3zf-NF-X119.91.6e-06447464118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H C++lCH+G CppC
  Lj0g3v0101599.1 447 CGQHVCESLCHRGYCPPC 464
                      ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.24E-560129No hitNo description
PROSITE profilePS500168.59168127IPR019787Zinc finger, PHD-finger
PROSITE patternPS01359071124IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.22971125IPR001841Zinc finger, RING-type
SMARTSM004380.29181199IPR000967Zinc finger, NF-X1-type
PfamPF014227.1183198IPR000967Zinc finger, NF-X1-type
CDDcd060087.59E-9223271No hitNo description
PfamPF01422100223230IPR000967Zinc finger, NF-X1-type
PfamPF014220.063233251IPR000967Zinc finger, NF-X1-type
SMARTSM004380.74233252IPR000967Zinc finger, NF-X1-type
CDDcd060086.85E-7287340No hitNo description
PfamPF014225.9E-4297314IPR000967Zinc finger, NF-X1-type
SMARTSM004380.025297316IPR000967Zinc finger, NF-X1-type
CDDcd060082.39E-8345393No hitNo description
PfamPF014220.0011355372IPR000967Zinc finger, NF-X1-type
SMARTSM004380.005355374IPR000967Zinc finger, NF-X1-type
PfamPF0142239413423IPR000967Zinc finger, NF-X1-type
SMARTSM00438150413443IPR000967Zinc finger, NF-X1-type
CDDcd060082.49E-8437489No hitNo description
PfamPF014229.8E-5447464IPR000967Zinc finger, NF-X1-type
SMARTSM004380.001447466IPR000967Zinc finger, NF-X1-type
SMARTSM0043843504522IPR000967Zinc finger, NF-X1-type
PfamPF01422160512521IPR000967Zinc finger, NF-X1-type
PfamPF014222.1557572IPR000967Zinc finger, NF-X1-type
SMARTSM0043815557586IPR000967Zinc finger, NF-X1-type
PfamPF0142221588614IPR000967Zinc finger, NF-X1-type
SMARTSM004380.41595616IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    Send to blast
MSLQRRDDRY RRVQRVRNPA STKNNHCQTQ LHENGDVGCS NPPRSRCEEE ENLPHLLQEI  60
QDKLTKDDVE CMICYDKVCR SAPVWSCSSC YSIFHLHCVK KWARAPSSID LSVEIKINWR  120
CPGCQSVQLT SSKEISYVCF CGKIPDPPCD FYLTPHSCGE PCGKPLSDLK FKNKEEEDHL  180
CPHLCVLQCH PGPCPPCKAF ASPCLCPCGK QTITTRCSDR PTCGHRCNKL LQCARHCCQQ  240
ICHLGPCGPC RFPINASCFC NKKMEVILCG DLTVKGEFEA QGGAFSCSST CGKKLACGNH  300
ACTETCHPGS CAECISSITH VKTCCCGKAK LEEQRHSCLD QIPTCSQACG KSLPCGMHQC  360
KQACHAWDCA PCLVLVSQRC RCGSISRAVE CCKTTSENEK FTCEKPCGQK KSCGRHRCNE  420
QCCLLSNPNA NWDPHLCSVP CGKKLRCGQH VCESLCHRGY CPPCVETIFT DLTCACGKTS  480
IPPPLPCGTT LPSCQLPCSV PQPCHHPTSH NCHCGDCPPC TVLVAKECVG GHVVVRNMPC  540
GSKDIRCNEL CGKTRKCGLH ACGRACHPPP CDDHSTVEGV HGSCGQTCGA PRKDCRHMCI  600
APCHPSSPCP DIICQFQVTI ACSCGRITAN VPCDAGGSRS RALHEASIIQ KLLLQPLDDN  660
DKKSPLGQRK LMCNDECSKW ERKRVLARAF EITSQKLDSL QFGENYESLA YLLRRDSKWV  720
LSIEERCKFL VLGKSRGTTT RGLKAHIFCP MLKDKRDVVK LIAERWKLSV STCGWEAKSF  780
IVVHVTKKSR PPTRVLGVKG VYASLDSLPP AFDHLVDMDP RLVVSFLELP RDADISALVL  840
RFGGECELVW LNNKNALAVF NDHARAATAI RRLDHGTVFQ GAVVIVGKSS VVKNAWGGSG  900
GAMNGGETKG NSWKNVVGWG EDEDLVTNIQ PTMWKKLEAP ISASLNPWSV LDQVSSSSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.25550.0cell culture| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0101599.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019421368.10.0PREDICTED: LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1J7GX750.0A0A1J7GX75_LUPAN; Uncharacterized protein
STRINGGLYMA08G06040.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1