PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0103979.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 181aa    MW: 21073.6 Da    PI: 9.9255
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0103979.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.72.2e-27201491128
              NAM   1 lppGfrFhPtdeel..vveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      l pG++F+Ptde l  v++yLk+++ +++l++ ++i+++d++++ePw+Lp     + +e++++f+ +  +    ++   r++ sg Wk   k k
  Lj0g3v0103979.1  20 LLPGYKFDPTDEVLilVNFYLKRRAFAQPLPV-RIIPNFDVFQTEPWELPgGdGKNFNEQKCFFYNTMGRDL--ESLDMRVAGSGQWKVVEKGK 110
                      579*********8622689*************.89***************5333334667888888888876..56899999******666655 PP

              NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v    ++e++g ++tL+f++ +  +++kt+Wvmh++rl
  Lj0g3v0103979.1 111 CVPIPrNNEVIGKRNTLIFWEMQGASARKTKWVMHQFRL 149
                      5544438999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3317169IPR003441NAC domain
PROSITE profilePS5100532.79420169IPR003441NAC domain
PfamPF023651.2E-1322149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTSFELEALI TYDKDGSVRL LPGYKFDPTD EVLILVNFYL KRRAFAQPLP VRIIPNFDVF  60
QTEPWELPGG DGKNFNEQKC FFYNTMGRDL ESLDMRVAGS GQWKVVEKGK CVPIPRNNEV  120
IGKRNTLIFW EMQGASARKT KWVMHQFRLV LVAKPSKISN WVVYRIFMKK DAKKDGECKW  180
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-21131718170Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0103979.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352865.13e-63NAC domain-containing protein 83-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-33NAC domain containing protein 83