PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0104249.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 157aa    MW: 17773.6 Da    PI: 4.356
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0104249.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-087302247
                     T-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                     + W++Ia +++ gRt++++k++w+ +
  Lj0g3v0104249.1  7 R-WSLIAGRLP-GRTANDVKNYWNCH 30
                     4.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.835135IPR017930Myb domain
SuperFamilySSF466895.69E-8638IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-12642IPR009057Homeodomain-like
PfamPF002493.4E-6728IPR001005SANT/Myb domain
CDDcd001677.13E-7731No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MLQLFSRWSL IAGRLPGRTA NDVKNYWNCH LSKKLNAQEA EDHRELTKDV QVIRPQPRNI  60
GSSSMKRMSQ SESPTDQGVQ QENIGVTFDA GGQSHNPESQ QESMYPGLNQ QGMVGCEFPM  120
DFQLEGFETM ASGEGSSSQW NWDDLFLDMD LYNEFSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0104249.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150378e-39AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442371.15e-71transcription factor MYB1
TrEMBLA0A072TGV71e-69A0A072TGV7_MEDTR; Myb transcription factor
STRINGGLYMA18G41520.18e-63(Glycine max)
STRINGXP_007140451.18e-63(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-14myb domain protein 113