PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0106299.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 1501aa    MW: 166977 Da    PI: 7.1522
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0106299.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004214691495123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       y+C+   Cg sF+  s++ rH r+  H
  Lj0g3v0106299.1 1469 YQCKveGCGLSFRYVSDFSRHRRKtgH 1495
                       99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.3E-151555IPR003349JmjN domain
PROSITE profilePS5118314.341657IPR003349JmjN domain
PfamPF023752.0E-151750IPR003349JmjN domain
PROSITE profilePS5118434.537294463IPR003347JmjC domain
SMARTSM005582.4E-44294463IPR003347JmjC domain
SuperFamilySSF511976.59E-26295459No hitNo description
PfamPF023731.4E-34328446IPR003347JmjC domain
Gene3DG3DSA:3.30.160.601.0E-413831406IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551013861408IPR015880Zinc finger, C2H2-like
SMARTSM003550.5514091433IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.57214091438IPR007087Zinc finger, C2H2
SuperFamilySSF576672.19E-514101446No hitNo description
PROSITE patternPS00028014111433IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-514111437IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.602.5E-914381463IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004214391463IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.71814391468IPR007087Zinc finger, C2H2
PROSITE patternPS00028014411463IPR007087Zinc finger, C2H2
SuperFamilySSF576671.52E-1014491492No hitNo description
Gene3DG3DSA:3.30.160.602.6E-1114641492IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.04514691495IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.92814691500IPR007087Zinc finger, C2H2
PROSITE patternPS00028014711495IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1501 aa     Download sequence    Send to blast
MGNVEIPNWL EGLPLAPEFR PTDTEFADPI AYISKIEKQA SKFGICKIIP PLPKPSKKYV  60
FSNLNRSLLK CPEWGSDDSS LGVSHSLKTG GSGDSGSDGA ARAVFTTRHQ ELGKSVRKTK  120
GAVQNPPPPA SVKRQVWQSG EVYTLEQFES KSKAFARSVL GTAKDVSPLV IEAMFWKAAL  180
EKPIYVEYAN DVPGSAFGES KGQHYISHRR RRKRAYSNSR LDTTDCKENK TNSVIDARND  240
ETKGDSAESQ ADICLLRSKS PMAVSTSLSN EASQSSKEKI SGASDDMQGT AGWKLSNSPW  300
NLQVIARSSG SLTRFMPDDI PGVTSPMIYI GMLFSWFAWH VEDHELHSLN FLHTGSSKTW  360
YAVPGDYAFA FEEAIRSEGY GGNIDHLAAL KLLGEKTTLL SPEVVIASGI PCCRLIQNPG  420
EFVVTFPRAY HVGFSHGFNC GEAANFGTPQ WLRVAKEAAV RRATMNHLPM LSHQQLLYLL  480
TMSFISRVPR TLLPGVRSSR LRDRQKEERE LLVKQAFIED MVQENKLLSI LLGKEATKQV  540
VLWNADLLPH SSKDCQLPAI ASTTGTCMAD TSYISSADKN SHYLLNEMSL YMENLTDSYF  600
GCDDLPCHFQ TDSGPLVCVG CGILGFPFMA IIQPTEKAIM ELIQDNHHLV QDSSLKSTAS  660
LHSSVSRDFS VSGLSSAKDS THQSLNKFNK CWDTSSKFLR PRIFCLEHAV QIVEMLQCKG  720
GANVLLICHS DYQKIKAHSR AVAEEIHGVF DYNEVSLDIA SPENLALIDL AIDNEEHNEC  780
EDWTSKLGIN LRYCVNVKNN TPSKQVPWTL ASGTLFSDKR PGSEISFLNW QSQRTRSKRS  840
NRLAQTKPYD RSQRKKDDPL EGRVDGSTTK KKLIQYSRRR FKSKQSCLSV ASMVHEFQEK  900
SKNESAVLSG DHSNCVLKDG FNTENFRSDC VLSCVSASTA MTPTHTEIQI AEVPTTMRLH  960
TGTATPPLSN SFPDDILMTE KVGAVIGNKI IQKLNIDGEN DLTPSRYKMH HNTNVSEICG  1020
KVSLDCPESP DKKCSSSLSN ATDRNVDMFG KNQNAEAIII DSIGNSLDLD DKGHQEYQSS  1080
CKSNKKETFP SADSLVNQPT VASRDGSSES PYNNNSAERI SNVMPVEETT EEEINSKSER  1140
GEEPPSDDKP NGEVGEVPIE LYAAEDLHDT VILDVEQCQI QNKNRINEES TSGYVAKGDN  1200
RSETLSEIGC SEVSVETCPE KDSCTHFTSD RENEMEIQPV NCSDVELCPG AQTALKDSSV  1260
SIQECSQIEK MVCGGENRNG SEDHLSQENR ELESCELNTA VPRSNAVKKR RMKVEETTKN  1320
QLDCHNFIRG PCEGLRPRRA GKIATEKSGV NISQSDKENP VAKRARRHSE VSVPHENKKD  1380
VVTKPHKCDL DGCHMSFMTK AELQLHKRNL CPHKGCGKKF SSHRYAIIHQ RVHEDKRPLK  1440
CPWKGCSMSF KWAWARIEHL RLHTGEKPYQ CKVEGCGLSF RYVSDFSRHR RKTGHYVKSP  1500
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A4e-54286477146346Transcription factor jumonji (Jmj) family protein
6ip4_A4e-54286477146346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1833838RTRSKR
2869879KKKLIQYSRRR
313071312KKRRMK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.48381e-126floral bud| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in cotyledons and leaves. Detected in inflorescences, stems, roots and siliques but not in shoot apical meristems or root tips. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18713399}.
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0106299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589417.10.0probable lysine-specific demethylase ELF6
RefseqXP_028182376.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A371EN000.0A0A371EN00_MUCPR; Putative lysine-specific demethylase ELF6 (Fragment)
STRINGGLYMA10G35350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]