PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0106459.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 178aa    MW: 19859.9 Da    PI: 8.1455
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0106459.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.16.8e-371569660
           zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      +cprC s+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn++
  Lj0g3v0106459.1 15 PNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTRGGSLRNVPVGGGCRKNRR 69
                     58***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-201160IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6861569IPR003851Zinc finger, Dof-type
PfamPF027011.5E-311569IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101753IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MENSGWKPSN VEISPNCPRC GSSNTKFCYY NNYSLTQPRY FCKGCRRYWT RGGSLRNVPV  60
GGGCRKNRRG NKNFRQSIDG LTFRNSPTDH HNPIGQCYEP RKNVNSPSSS SGVTEGSDID  120
LAQVYANFLH QKPDSGAGIE NNIPDHQLQT VFDPSLENSS SLPEELCLTG CLNLPEQH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0106459.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6629143e-57KP662914.1 Cajanus cajan Dof22 (Dof22) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411820.12e-78PREDICTED: dof zinc finger protein DOF3.5-like, partial
RefseqXP_025979763.11e-77dof zinc finger protein DOF3.5
SwissprotQ9SVC51e-40DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A0S3SUM11e-76A0A0S3SUM1_PHAAN; Uncharacterized protein (Fragment)
STRINGGLYMA10G10142.12e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.16e-34Dof family protein