PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0114779.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 144aa    MW: 16919.5 Da    PI: 10.8574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0114779.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.7e-16107144142
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeA 42 
                      ++y+GVr++k +g+W+AeIrd +     + +r +lg++ taeeA
  Lj0g3v0114779.1 107 CKYRGVRQRK-WGKWAAEIRDpF-----KgARLWLGTYNTAEEA 144
                      79*******9.**********55.....45*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.3E-306144IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.83E-20107144No hitNo description
PfamPF008473.3E-10107144IPR001471AP2/ERF domain
PROSITE profilePS5103217.938108144IPR001471AP2/ERF domain
SMARTSM003805.2E-9108144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-19108144IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-14108144IPR016177DNA-binding domain
PRINTSPR003677.9E-10109120IPR001471AP2/ERF domain
PRINTSPR003677.9E-10131144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSKSRKQPAS RRLRPQPLPE FKMVRKLRVI YDDPYATESS DDEYYHSREK KPRKIKRCIT  60
EIPLPPLVPV IPEPSSFAEK KINNAVEVHN KKRVSTQNPS TRRQPSCKYR GVRQRKWGKW  120
AAEIRDPFKG ARLWLGTYNT AEEA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0114779.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098631e-161AP009863.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT13N05, TM1862b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027365139.12e-46ethylene-responsive transcription factor ERF118-like
TrEMBLB0BLJ12e-68B0BLJ1_LOTJA; CM0545.620.nc protein
STRINGXP_004497097.16e-41(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-21ERF family protein