PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0121279.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

CAMTA

Protein Properties

Length: 129aa MW: 15621.8 Da PI: 9.0238

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0121279.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	172.1	7.8e-54	13	128	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 ++e kkrwlk+ e++ iL n+++ e+t+ ++++ + gsl+L+nr+++r+frkDG++w+kk+dgktv E+he+LKvg+ve+l+cyYah+een+tf Lj0g3v0121279.1 13 YEEaKKRWLKPVEVLYILRNHNECEFTNVPPHQSTGGSLFLFNRRVLRFFRKDGHNWRKKRDGKTVGEAHERLKVGNVEILNCYYAHGEENRTF 106 56669*************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhyle 116 qrr+yw+L+ e+e+ivlvhy++ Lj0g3v0121279.1 107 QRRSYWMLDPEYEHIVLVHYRD 128 ******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.742	9	129	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.5E-64	12	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.2E-47	15	128	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MPPGLEYNIS ELYEEAKKRW LKPVEVLYIL RNHNECEFTN VPPHQSTGGS LFLFNRRVLR 60 FFRKDGHNWR KKRDGKTVGE AHERLKVGNV EILNCYYAHG EENRTFQRRS YWMLDPEYEH 120 IVLVHYRDI

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269\|PubMed:12218065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0121279.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	3e-35	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003552779.1	1e-80	calmodulin-binding transcription activator 4
Refseq	XP_028212348.1	1e-80	calmodulin-binding transcription activator 4-like
Swissprot	Q9FYG2	1e-61	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A0B2QVH0	3e-79	A0A0B2QVH0_GLYSO; Calmodulin-binding transcription activator 4
TrEMBL	K7MP75	3e-79	K7MP75_SOYBN; Uncharacterized protein
STRING	GLYMA18G00840.2	5e-80	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14241	18	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	7e-53	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]