PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0127459.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 200aa    MW: 22470.9 Da    PI: 8.2115
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0127459.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-19109159255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp+     +r++lg+f+t+ +Aaka++ a+ +++g
  Lj0g3v0127459.1 109 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDTEIDAAKAYDYAAFRMRG 159
                      7********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-23109169IPR016177DNA-binding domain
SMARTSM003801.2E-34109173IPR001471AP2/ERF domain
PfamPF008471.7E-13109159IPR001471AP2/ERF domain
PROSITE profilePS5103224.882109167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-31109168IPR001471AP2/ERF domain
PRINTSPR003674.1E-13110121IPR001471AP2/ERF domain
CDDcd000181.09E-14117167No hitNo description
PRINTSPR003674.1E-13149169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MTTSEEIYSL KFLSQHLLGD ISDSYLTNLI PVKLEDSSSE FDLDSLFSEQ SSFCTFLESF  60
SFQADTEVAM SHEAKNSITP THSGETQKSS SPEPEVSGKQ EQTCYQGRRY RGVRRRPWGK  120
FAAEIRDPTR KGTRVWLGTF DTEIDAAKAY DYAAFRMRGR KAILNFPLEA GKASPKPSNS  180
GRKRGREQRE SGTSSSHVMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-29106168264ATERF1
3gcc_A7e-29106168264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.91390.0floral bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0127459.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105270.0AP010527.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT135A04, TM1816, complete sequence.
GenBankAP0105290.0AP010529.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT45M19, TM1126b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219549.12e-87ethylene-responsive transcription factor ERF107-like
TrEMBLI3T6K81e-144I3T6K8_LOTJA; Uncharacterized protein
STRINGGLYMA20G33800.11e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-33ERF family protein