PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0130139.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 510aa    MW: 55347.2 Da    PI: 9.9641
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0130139.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.32.3e-2963146186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++r++k+Ckek+en+ k++k++keg+++++  + +t+++fdql+
  Lj0g3v0130139.1  63 RWPRQETLALLRIRSDMDVAFRDAAVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKS--DGKTYRFFDQLQ 146
                      8********************************************************************964..5557******98 PP
2trihelix39.11.9e-12457504148
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspk 48 
                      rW+k ev aLi++r++++++++++  k+plWee+s+ mr  g++r+  
  Lj0g3v0130139.1 457 RWPKVEVEALIKLRTSLDSKYQENGPKGPLWEEISALMRNLGYNRTGD 504
                      8********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.004960122IPR001005SANT/Myb domain
CDDcd122032.06E-2562127No hitNo description
PfamPF138375.8E-1962148No hitNo description
PROSITE profilePS500906.71362120IPR017877Myb-like domain
PROSITE profilePS500905.03450510IPR017877Myb-like domain
CDDcd122034.65E-16456504No hitNo description
PfamPF138371.2E-6456504No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MLGDSAVLSG GGGGSGDAAA AAAAAGGGGA ERTATSGGAV GSNSGDDERG RIEEGERSFG  60
GNRWPRQETL ALLRIRSDMD VAFRDAAVKG PLWEEVSRKL AELGYHRNAK KCKEKFENVY  120
KYHKRTKEGR SGKSDGKTYR FFDQLQALEN HPSLQSPNSS NSRPLPPPPP QPPALVVTPA  180
ATTVPMPLPH VSTVPSTTTT PPNIPMPQGI AISTTPSMNL TNTIPSFPTS NPTNFPPSTA  240
NPSNTTTPIS FPTIPMDLLS NSTSSSTSSD ETLEGRRKRK RKWKDFFERL MKEVVEKQED  300
LQKKFLEAVE KREHDRTARE EAWRVQEMQR INREREILAQ ERSIAAAKDA AVMSFLQKIA  360
EQQNLGQALS NIVQPPRPPQ PVTQPSAAPP PAPTPAQGQA QIVQQQQPVA PVTQPGPPPT  420
QTVMAGQVGL VPQQGVTGME IVKADNGENS MGASSSRWPK VEVEALIKLR TSLDSKYQEN  480
GPKGPLWEEI SALMRNLGYN RTGDHGRRRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280RRKRKR
2275281RRKRKRK
3276281RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0130139.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3724992e-67AF372499.1 Glycine max GT-2 factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019453353.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A1J7HV110.0A0A1J7HV11_LUPAN; Uncharacterized protein
TrEMBLA0A2K3N7980.0A0A2K3N798_TRIPR; Trihelix transcription factor GT-2-like protein
TrEMBLA0A2Z6LHH30.0A0A2Z6LHH3_TRISU; Uncharacterized protein
STRINGAES623650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-48Trihelix family protein