PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0130569.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WRKY

Protein Properties

Length: 141aa MW: 15735.9 Da PI: 9.8899

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0130569.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.2	2e-29	2	58	3	58
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv++s +dp++++ tYegeHnh Lj0g3v0130569.1 2 DGYQWRKYGQKVTRDNPSPRAYFKCSYApSCPVKKKVQKSLDDPTILVATYEGEHNH 58 9************************99************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	24.983	1	61	IPR003657	WRKY domain
SMART	SM00774	1.0E-30	2	60	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-24	2	60	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.9E-27	2	59	IPR003657	WRKY domain
Pfam	PF03106	1.3E-24	2	58	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MDGYQWRKYG QKVTRDNPSP RAYFKCSYAP SCPVKKKVQK SLDDPTILVA TYEGEHNHGH 60 QQLAKIPLVS RQSEEGPMGS VHVSSPTSII DKVDNVQKSS SIRQFLVQQM ATSLTRDPNF 120 TAALATAISG RILDQTSMPK W

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-20	2	58	19	74	Probable WRKY transcription factor 4
2lex_A	4e-20	2	58	19	74	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.21635	0.0	cell culture

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0130569.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003588828.1	3e-77	probable WRKY transcription factor 40
Swissprot	Q9SK33	2e-47	WRK60_ARATH; Probable WRKY transcription factor 60
TrEMBL	G7I7M7	6e-76	G7I7M7_MEDTR; Putative transcription factor WRKY family
STRING	AES59079	1e-76	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF973	34	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25000.1	8e-50	WRKY DNA-binding protein 60

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang Y, et al. Regulation of oncogene expression in T-DNA-transformed host plant cells. PLoS Pathog., 2015. 11(1): p. e1004620 [PMID:25615824] Geilen K,Böhmer M Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana. Sci Rep, 2015. 5: p. 13369 [PMID:26293691] Geilen K,Böhmer M Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation. Plant Signal Behav, 2015. 10(11): p. e1106659 [PMID:26479147] Lu K, et al. Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance. J. Exp. Bot., 2016. 67(17): p. 5009-27 [PMID:27406784]