PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0134509.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 87aa MW: 9580.23 Da PI: 8.9996

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0134509.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.8	4.9e-16	2	67	1	61
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamssl 61 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l+++ pe+ r+ ++s + Lj0g3v0134509.1 2 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNSGPEHLRPGLFSII 67 6**********************************************************9988544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.41	1	87	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.5E-12	2	66	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCSIR PCLQWIKSPE SQANATVFLA KFYGRAGLMN LVNSGPEHLR 60 PGLFSIIFSS PVSPTRIFYS CSCCTKL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0134509.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009660	1e-146	AP009660.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT23D08, TM0220, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077976.1	3e-39	LOB domain-containing protein 40
Refseq	XP_012568012.1	3e-39	LOB domain-containing protein 41
Refseq	XP_026386660.1	3e-39	LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-38	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A067KMA8	6e-38	A0A067KMA8_JATCU; Uncharacterized protein
TrEMBL	A0A0B2Q7W0	4e-38	A0A0B2Q7W0_GLYSO; LOB domain-containing protein 41
TrEMBL	A0A0B2QZ47	1e-38	A0A0B2QZ47_GLYSO; LOB domain-containing protein 41
TrEMBL	A0A1S3DX07	6e-38	A0A1S3DX07_CICAR; LOB domain-containing protein 41
TrEMBL	A0A200Q3F6	5e-38	A0A200Q3F6_9MAGN; Uncharacterized protein
STRING	XP_007139150.1	2e-38	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-41	LOB domain-containing protein 41