PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0140069.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 340aa    MW: 37879.7 Da    PI: 6.2509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0140069.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.5e-12161208355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r h  +Er+RR+++ ++f  L  +lP +     kK++Ka++Le A+ Y+k+L+
  Lj0g3v0140069.1 161 RDHVLAERKRREKLSQRFIALSAVLPGL-----KKMDKATVLEDAISYLKQLK 208
                      56999***********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.758158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-16162220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9162207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.50E-14163212No hitNo description
SuperFamilySSF474591.7E-16163225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-15164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEEPTYFHQF PMDSSYAEFQ DLEFESFTAS PDESYSSGNK RFNSESPDYS FAPARPTKQP  60
KTETTWSAYG TDLIASKASS SSSSPKIISF EHSNVSSVTS SQPFHNMGAA NVVKPKMESG  120
FGENLDFAAV ISQGAYDDKS FLYNENKLAA TATIRNQVQA RDHVLAERKR REKLSQRFIA  180
LSAVLPGLKK MDKATVLEDA ISYLKQLKEQ VKTLEEQVAD KTVETAIFLK RSVVFGDDDG  240
SFSDENSDQS LPEIEARVSG KDILIRIHCE KHHGKAVSAI LVELEKHHLT VQSTSILPFG  300
NNTLDITIVT QVNILINLVI FPCYRTIIYS IKIGIIGKFK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171ERKRRE
2167172RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0140069.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346371.11e-134transcription factor bHLH18-like
SwissprotQ1PF164e-49BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A151SEJ91e-132A0A151SEJ9_CAJCA; Transcription factor bHLH19
STRINGGLYMA05G23291.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]