PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0140239.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 614aa    MW: 68665.1 Da    PI: 6.1054
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0140239.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62e-2269169198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++a+++       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + 
  Lj0g3v0140239.1  69 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RG 158
                      99****************************975444444..8************************************************..44 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      +++el+v+v+r
  Lj0g3v0140239.1 159 ENGELRVGVRR 169
                      9999*****97 PP
2Auxin_resp1111.2e-36195277183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv+  +++ W +S+WrsLk
  Lj0g3v0140239.1 195 ASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVEYNNSSVWADSEWRSLK 277
                      789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.55E-4459198IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-4066184IPR015300DNA-binding pseudobarrel domain
CDDcd100176.93E-2167169No hitNo description
PROSITE profilePS5086311.25169171IPR003340B3 DNA binding domain
PfamPF023623.7E-2069169IPR003340B3 DNA binding domain
SMARTSM010191.2E-2169171IPR003340B3 DNA binding domain
PfamPF065077.9E-35195277IPR010525Auxin response factor
PfamPF023091.0E-11487580IPR033389AUX/IAA domain
PROSITE profilePS5174526.102490583IPR000270PB1 domain
SuperFamilySSF542774.32E-11492567No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MNQGLEHQMP SFNLPCKILC KVVNIHLRAE PETDEVYAQI TLLPETDQSE VASPDEPLPE  60
PTRCTVHSFC KTLTASDTST HGGFSVLRRH ADDCLPPLDM TQQPPWQELV ATDLHGNEWH  120
FRHIFRGQPR RHLLTTGWSV FVSSKKLVAG DAFIFLRGEN GELRVGVRRL MRQQSNMPSS  180
VISSHSMHLG VLATASHAIA TGTLFSVFYK PRTSRSEFIV SVNKYLEARN HKLSVGMRFK  240
MRFEGEEVPE RRFSGTIVGV EYNNSSVWAD SEWRSLKVQW DEPSSILRPD RVSPWELEPL  300
VSTPPANSQP TPRNKRSRPP VLPSTIPDSS QGVWKSPVDS PPFSYRDPQH GRDLYASPKF  360
NSTATSFFCF GGNNSASNKS TYWSTRMENS TETFSPIALK ESGEKRQGTG NGCRLFGIQL  420
LENSNAEESL PTVTLSGRLG DDQSIPSLDA ESDQHSEPSN VNRSDIPSVS CDAEKSCLRS  480
PQESQSRQIR SCTKVHMQGM AVGRAVDLTQ FDGYEDLLRK LEEMFDIKGE LCGSAKKWQV  540
VYTDNEDDMM MVGDDPWLEF CSVVRKIFIY TAEEVKKLSP KIGLPMNDEG KPSKLDSEAV  600
VNPEDQSSVV GPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.0130256357Auxin response factor 1
4ldw_A0.0130256357Auxin response factor 1
4ldw_B0.0130256357Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.67640.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}.
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0140239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592874.10.0auxin response factor 1
RefseqXP_024631839.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLG7IL560.0G7IL56_MEDTR; Auxin response factor
STRINGAES631250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]