PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0141839.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 238aa    MW: 26787.5 Da    PI: 10.3496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0141839.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.3e-08154194954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR ri +++  L++++P       +K++ a++L +A++Y+k L
  Lj0g3v0141839.1 154 ARLRRGRISERIRILQRMVPGG-----TKMDTASMLDEAIHYLKFL 194
                      699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.754145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-12146203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.55E-11147199No hitNo description
SuperFamilySSF474594.45E-14149206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-5155194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MNTINSANLN DDKMHTMPMW MHHSPESPAS HGNNNNTVTS FPPPQIFSSA TSINNNNPPT  60
PWSTFTHHFP SSTTPSFPNK LYTFMTPVLP EQDHHQTPEE PKLLNSEKSS SMAAMREMIF  120
RMAAMQPVVI DSESVKPPKR RNVKISKDPQ SVAARLRRGR ISERIRILQR MVPGGTKMDT  180
ASMLDEAIHY LKFLKKQVQS LQRLTAANSC SRVGFPASYL PTTKGYQTQS VNCFRDAC
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0141839.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019414815.12e-62PREDICTED: transcription factor HEC2-like
TrEMBLA0A4P1QYX63e-62A0A4P1QYX6_LUPAN; Uncharacterized protein
STRINGAES733042e-59(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-42bHLH family protein