PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0143769.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 231aa    MW: 24555.9 Da    PI: 4.9038
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0143769.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-1856106155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ta++Aa+a++aa++ ++g
  Lj0g3v0143769.1  56 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFATAQMAARAHDAAALTIKG 106
                      68*****998.**********854...59*********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1256106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-3257115IPR001471AP2/ERF domain
SMARTSM003804.4E-3557120IPR001471AP2/ERF domain
PROSITE profilePS5103222.5557114IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-2157115IPR016177DNA-binding domain
PRINTSPR003674.8E-105869IPR001471AP2/ERF domain
CDDcd000181.66E-2058116No hitNo description
PRINTSPR003674.8E-108096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGDSPPPNSD TETITSSTNC ASPCSPLSSS SSSKTEEKRG NKRGRDTSTN TNSKHPVYRG  60
VRMRTWGKWV SEIREPRKKN RIWLGTFATA QMAARAHDAA ALTIKGSSAI LNFPELAASL  120
PRPASSSPRD VQAAAAKAAS MGTISPPSPA SSSAASTPDD EDLGEIVELP SLGSSFDSPD  180
PSGGEFVFFD SVDGWPYQWD HGIYGEEQGG GGYFNTISMQ DSESMVLSLW S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1851115873Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0143769.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533400.11e-81ethylene-responsive transcription factor TINY
RefseqXP_028180215.11e-81ethylene-responsive transcription factor TINY-like
SwissprotQ391272e-59TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A445J3712e-80A0A445J371_GLYSO; Dehydration-responsive element-binding protein 3
TrEMBLK7LEV42e-80K7LEV4_SOYBN; Uncharacterized protein
STRINGGLYMA09G32730.24e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.16e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]