PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0146729.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WRKY

Protein Properties

Length: 257aa MW: 28134.4 Da PI: 9.0744

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0146729.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2.1e-30	3	62	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg Hnh+ Lj0g3v0146729.2 3 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQVQRCAEDMSILITTYEGVHNHP 62 58************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	28.128	1	64	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	5.6E-30	3	64	IPR003657	WRKY domain
SuperFamily	SSF118290	7.06E-27	3	64	IPR003657	WRKY domain
SMART	SM00774	1.4E-36	3	63	IPR003657	WRKY domain
Pfam	PF03106	7.6E-27	4	62	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MQMNDGCQWR KYGQKIAKGN PCPRAYYRCT VSPTCPVRKQ VQRCAEDMSI LITTYEGVHN 60 HPLPLSATAM ASTTCAAASM LQCPSSFSSH SQQGLESKYS DIAHIINSSC ADAYCYSTTP 120 NALNFSTCQI SRPNNQFHFP NSSISILNSH PTITLDLAAA SSSTSSHSGK FSQIPKYSST 180 NLNFSSGFSP LQYSIPQSPW SSYSSGNYFK SEGTLAQNRN QGGYLHMSSY ALRYSQQGNS 240 VLFPPPPPSK NISSNRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-20	3	64	17	77	Probable WRKY transcription factor 4
2lex_A	5e-20	3	64	17	77	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269\|PubMed:24884371}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0146729.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014617466.1	9e-92	probable WRKY transcription factor 61
Refseq	XP_028230555.1	9e-92	probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	1e-45	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A445LYN1	2e-90	A0A445LYN1_GLYSO; Putative WRKY transcription factor 72 isoform A
TrEMBL	I1J5L7	2e-90	I1J5L7_SOYBN; Uncharacterized protein
STRING	GLYMA01G05050.1	3e-91	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	3e-40	WRKY DNA-binding protein 9

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]