PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0147679.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 206aa    MW: 23789.3 Da    PI: 6.7193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0147679.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.2e-161694146
                     TSSS-HHHHHHHHHHHHHTTTT..................................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..................................tWktIartmgkgRtlkqcksrwqk 46
                     +g+WT eEd++l+++++ +G g                                   W++Ia++++ gRt++++k++w++
  Lj0g3v0147679.1 16 KGPWTIEEDLILINYIANHGEGvwntlaksaaskqrhhfqyvpkdlqhlitlvflyEWSKIAKHLP-GRTDNEIKNFWRT 94
                     79****************************************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.19311100IPR017930Myb domain
SuperFamilySSF466891.23E-131392IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-181586IPR009057Homeodomain-like
SMARTSM007173.9E-101598IPR001005SANT/Myb domain
PfamPF002491.4E-61646IPR001005SANT/Myb domain
CDDcd001671.76E-81894No hitNo description
PfamPF002497.7E-86194IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-687139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDKKPCNSSH DPEVRKGPWT IEEDLILINY IANHGEGVWN TLAKSAASKQ RHHFQYVPKD  60
LQHLITLVFL YEWSKIAKHL PGRTDNEIKN FWRTRIQKHI KQAESLQQQQ SSSEINDHHQ  120
TSTSQMSTMA EPMDTYSPHS SSYHHHQGTL NLEPSSFPLS HQFPTTITTH DHPSSCCTND  180
NNSNNNSNIN FWSMEDIWSM QLLNGD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.82431e-110flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0147679.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY111053e-42Y11105.1 P.sativum mRNA for Myb-like protein (Myb26).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027927196.18e-75myb-related protein 305-like
SwissprotP813918e-51MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A371FNT39e-75A0A371FNT3_MUCPR; Myb-related protein 305
STRINGGLYMA16G07960.15e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.17e-41myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]