PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0154199.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 192aa    MW: 22314.3 Da    PI: 7.2513
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0154199.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.23.8e-2574164190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      +fY +Y++++GF+vr++++++s+ n++++ ++fvCsk+g+r+++  +++++    + + tr gC a++++ +++ g+w+vtk+++eH+H+l+
  Lj0g3v0154199.3  74 EFYIAYGRRMGFTVRIHHNRRSRVNNQVIGQDFVCSKQGFRATKYVHRKDR-VlpPPPATREGCLAMIRLALRDGGTWVVTKFVKEHTHKLM 164
                      6*****************************************998883332.2448899*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-2274164IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MMNHHYCQGF DSDYSDLVMQ AEISEKHEKE DEFSEKLDSC ADEDEKDVEQ PIAGTEALEP  60
FAGMEFNSRE EAREFYIAYG RRMGFTVRIH HNRRSRVNNQ VIGQDFVCSK QGFRATKYVH  120
RKDRVLPPPP ATREGCLAMI RLALRDGGTW VVTKFVKEHT HKLMSPSKVP WRGSEKHLVS  180
EVCFCFSRLR QI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0154199.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020223614.11e-107protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLA0A371H9201e-106A0A371H920_MUCPR; Protein FAR1-RELATED SEQUENCE 5 (Fragment)
STRINGGLYMA13G41920.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.28e-27FAR1 family protein