PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0157669.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 276aa    MW: 31050.8 Da    PI: 5.6963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0157669.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-183180255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+ +l+g
  Lj0g3v0157669.1 31 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFTTAEEAAMAYDEAAWRLYG 80
                     69****999.**********965...5*********************988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.55E-313090No hitNo description
PROSITE profilePS5103223.0373188IPR001471AP2/ERF domain
SMARTSM003802.1E-373194IPR001471AP2/ERF domain
PfamPF008475.5E-123180IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-213189IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-303189IPR001471AP2/ERF domain
PRINTSPR003672.0E-103243IPR001471AP2/ERF domain
PRINTSPR003672.0E-105470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDHTCKRSSA LKPWKKGPTR GKGGPQNASC EYRGVRQRTW GKWVAEIREP KKRTRLWLGS  60
FTTAEEAAMA YDEAAWRLYG PDAYLNLPHL QPSSNAAPIK SGKFKWLPSK NFMSMFPTCG  120
ALNVNAQPSV HFIHQRLQEL KQNAVVTQPP SKEEIMTVGS KNNAEKPSAE KDAQTLPEAM  180
LGDLQEKPQI DLHEFLQQLG ILKEERHSER ADSSGSSTVN EAVSRDDNDQ LGVFSDNSVN  240
WEALIAGIQE SEDIIQLEEA YDMNDELNFS TSIWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-183288360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0157669.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493523.11e-146dehydration-responsive element-binding protein 2F
SwissprotQ9SVX53e-85DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A1S2XRS01e-145A0A1S2XRS0_CICAR; dehydration-responsive element-binding protein 2F
STRINGXP_004493523.11e-146(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-77ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]