PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0157999.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 257aa    MW: 29501.7 Da    PI: 9.487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0157999.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-1368121155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++ +hn+ Er RR++iNs ++ Lr+llP  +   + kK+s  ++   +++Y+ +Lq
  Lj0g3v0157999.1  68 KKLNHNASERDRRKKINSLIASLRSLLPAgQ--DQMKKMSIPATISGVIKYLPELQ 121
                      6789*************************76..78888**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-1465142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-1566139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.62767120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-1168121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-1068125No hitNo description
SMARTSM003532.3E-973126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MLRFPSPVFS YSNMECLLDD EPFNHNQNNF NKERVSSSEY SFPNQPQPAV VLQAKVVEML  60
TAPSPDTKKL NHNASERDRR KKINSLIASL RSLLPAGQDQ MKKMSIPATI SGVIKYLPEL  120
QQQVKGLTKK KEKLLSRISQ QGDAVNEESR KRKKFINPHH NSADFIVSNS WLNDCEAAIH  180
IISSNYEEAH NHKTPLPEII LCLENNGYFL LNASSTETFG GRVFYILHFQ VEKTHRLESD  240
IITQKLLSIY EKKQRMF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149153RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0157999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354033.12e-89bHLH transcription factor bHLH300
RefseqXP_028225228.12e-89transcription factor ORG3-like
TrEMBLI3T1X11e-128I3T1X1_LOTJA; Uncharacterized protein
STRINGGLYMA03G28630.17e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.15e-41bHLH family protein