PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0158379.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 181aa MW: 20877 Da PI: 6.2754

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0158379.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	227.8	5e-70	1	181	193	374
GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +L+++pgEal+Vn+++qlh+++desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++Fl+rf+ea +yysa+f+sl+ +lpres++r++vE Lj0g3v0158379.1 1 MLSCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTAPFLQRFVEAYKYYSAVFESLDITLPRESQDRMNVE 94 799***************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r++l+r+ivnvvaceg++r+er e ++kWr+r+++aGF+p p+s ++ ++++ l++ + ++ y+++ee g+l +gW+d++L+++SaWr Lj0g3v0158379.1 95 RQCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTPSPMSANVGDEIRKLIKLYCDR-YKIKEEMGALHFGWEDKNLIVASAWR 181 ******************************************************966.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.7E-67	1	181	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	33.28	1	162	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MLSCRPGEAL VVNFAFQLHH MPDESVSTVN ERDQLLRLVK SLNPKLVTVV EQDVNTNTAP 60 FLQRFVEAYK YYSAVFESLD ITLPRESQDR MNVERQCLAR DIVNVVACEG EDRIERYEVA 120 GKWRARMTMA GFTPSPMSAN VGDEIRKLIK LYCDRYKIKE EMGALHFGWE DKNLIVASAW 180 R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-30	6	181	199	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0158379.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-166	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020212491.1	1e-122	scarecrow-like protein 1
Swissprot	Q9SDQ3	1e-105	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A151TS87	1e-120	A0A151TS87_CAJCA; Scarecrow-like protein 1
STRING	XP_007137518.1	1e-120	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6266	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	1e-108	SCARECROW-like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]