PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0159319.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

G2-like

Protein Properties

Length: 240aa MW: 26462.6 Da PI: 10.5611

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0159319.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	25.9	2.2e-08	1	21	36	56
G2-like 36 mkvkgLtlehvkSHLQkYRla 56 m++++Lt+++++SHLQkYR++ Lj0g3v0159319.1 1 MGIDCLTRHNIASHLQKYRSH 21 99*****************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-7	1	24	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MGIDCLTRHN IASHLQKYRS HRKHLLAREA EAASWNQRRQ MYGVAGGVKR EVSPWLAPTI 60 GFPPMTPLPM HHFRPLHVWG HPSTDQSFMN MWPKHPPHSR PSPPLPLPWV PTATSPAPQD 120 PKFWHAQHQQ TPNAPIPGTA CFPQPLTAAK FGCPPVPGIP PPLHAVYKTD VRRHRRVPAP 180 AGPILNLHPS KESIDAAIGD VLSKPWLPLP LGLKAPALDS VIGELQRQGV SNIPPSCEGH

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in rosette and cauline leaves. Expressed at low levels in cotyledons and shoots. {ECO:0000269\|PubMed:12220263}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269\|PubMed:11828027, ECO:0000269\|PubMed:12220263, ECO:0000269\|PubMed:17533111, ECO:0000269\|PubMed:18643989, ECO:0000269\|PubMed:19376934, ECO:0000269\|PubMed:19383092, ECO:0000269\|PubMed:19726569, ECO:0000269\|PubMed:23459204}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0159319.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Repressed by BZR2. {ECO:0000269\|PubMed:12220263, ECO:0000269\|PubMed:21214652}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027346402.1	1e-110	transcription activator GLK1-like isoform X1
Swissprot	Q9SIV3	3e-53	GLK1_ARATH; Transcription activator GLK1
TrEMBL	A0A445IC92	2e-98	A0A445IC92_GLYSO; Transcription activator GLK1 isoform A
STRING	GLYMA13G37010.1	8e-99	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4242	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	1e-39	GBF's pro-rich region-interacting factor 1

Publications ? help Back to Top
Leister D,Kleine T Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants. Physiol Plant, 2016. 157(3): p. 297-309 [PMID:26876646] Nagatoshi Y, et al. GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23 [PMID:27035938] Tokumaru M, et al. Ubiquitin-Proteasome Dependent Regulation of the GOLDEN2-LIKE 1 Transcription Factor in Response to Plastid Signals. Plant Physiol., 2017. 173(1): p. 524-535 [PMID:27821720] Ni F, et al. Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis. Mol Plant, 2017. 10(5): p. 764-766 [PMID:27964999] Wang H,Seo JK,Gao S,Cui X,Jin H Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1. New Phytol., 2017. 215(3): p. 1144-1155 [PMID:28656601]