PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0160869.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 252aa    MW: 28307.9 Da    PI: 4.0979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0160869.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171861146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg +T+eE+e++++ +k lG++ W+ Ia++++ gRt++++k++w++
  Lj0g3v0160869.1 18 RGHFTQEEEEIIIRMHKNLGNR-WSIIAAELP-GRTDNEVKNHWHT 61
                     899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.01E-17968IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-251067IPR009057Homeodomain-like
PROSITE profilePS5129427.4351367IPR017930Myb domain
SMARTSM007171.4E-161765IPR001005SANT/Myb domain
PfamPF002492.4E-151861IPR001005SANT/Myb domain
CDDcd001677.72E-132163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLHWFFMQVY YLRPDIKRGH FTQEEEEIII RMHKNLGNRW SIIAAELPGR TDNEVKNHWH  60
TSLKRRVQQN EEAKVSNSKN EGPTSGNGIG SLQVTPPATS QISDSTGALS PFSSSSEFSC  120
ISSDLNTTSS SNEKLVFEDD FDFLDAFAEH VNEKFWSELQ IDANGALQNQ DTTQILDACA  180
LSPNQSSSQS LALDNALGNF LDANTDPTID NFWGQPYVTD TSFAAESEYF SIGYDADLWS  240
QSDLYDEPFC LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-16116752108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.75611e-140root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0160869.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097501e-81AP009750.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT47O18, TM1899, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348209.11e-90transcription factor MYB14-like
TrEMBLA0A445KG294e-71A0A445KG29_GLYSO; Transcription factor MYB14 isoform B
STRINGGLYMA06G45547.16e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.23e-27myb domain protein 15