PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0161009.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19630.8 Da    PI: 10.4181
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0161009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.41.4e-211360249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +i +k +rqvtfskR +g++KKA+EL++ C+++  +i+fs++gk+y +
  Lj0g3v0161009.1 13 KIIEKVKRQVTFSKRCKGLFKKASELCTICGVDLVIIVFSPSGKVYSF 60
                     677899****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-28463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.955464IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-25581IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-18626IPR002100Transcription factor, MADS-box
PfamPF003193.6E-231360IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-182641IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-184162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MKGQGRKKIE IKKIIEKVKR QVTFSKRCKG LFKKASELCT ICGVDLVIIV FSPSGKVYSF  60
GHPSVEAGHQ RYLFQAPHPT SETMVYILAQ QNVTVRGLHR RLSHVNKQLD PNKKHGEELA  120
RRHKETHAQF LGATQVEEMN MSQLEKFRAT LYELKNHVTS CGADVVATNP QPH
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0161009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364754.11e-53agamous-like MADS-box protein AGL62
TrEMBLA0A371I0D41e-48A0A371I0D4_MUCPR; Agamous-like MADS-box protein AGL62 (Fragment)
STRINGAES628146e-48(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-29AGAMOUS-like 62