PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0164269.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GATA
Protein Properties Length: 247aa    MW: 26821.7 Da    PI: 7.6792
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0164269.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.7e-17194228133
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                      C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +
  Lj0g3v0164269.1 194 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWANR 228
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.6415994IPR010399Tify domain
SMARTSM009795.5E-135994IPR010399Tify domain
PfamPF062003.8E-146393IPR010399Tify domain
PROSITE profilePS5101712.481126168IPR010402CCT domain
PfamPF062031.7E-15126168IPR010402CCT domain
SMARTSM004016.6E-12188242IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.328188245IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-10190236No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13192228IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.90E-13193246No hitNo description
PfamPF003208.4E-15194228IPR000679Zinc finger, GATA-type
PROSITE patternPS003440194221IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MYSSMNIPDQ IKDNDGENHN HYDSHTLDDG GGGGGGVEDV STDNAYGSGG VGHELSIPPC  60
DDSSQLTISF RGQVYVFDSV TPEKVQAVLL LLGGCELSSG SQGLEISPTN QRGSAEFPAK  120
CSLPQRAASL IRFRQKRKER CFDKKVRYGV RQEVALRMQR NKGQFTSAKK QDGTNSWGAD  180
QDSVQDLVQS ETSCTHCGTS SKSTPMMRRG PSGPRSLCNA CGLFWANRRF ACQPTVGTDP  240
VFASRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.56470.0cell culture| floral bud| flower| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0164269.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501661.11e-125GATA transcription factor 25-like
SwissprotQ9LRH66e-76GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A1S2Y9V71e-124A0A1S2Y9V7_CICAR; GATA transcription factor 25-like
STRINGXP_004501661.11e-124(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.25e-70GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]