PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0166949.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 495aa    MW: 55788 Da    PI: 8.3729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0166949.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000147292323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++C+k F r  nL+ H r H
  Lj0g3v0166949.1 72 CEICNKGFQRDQNLQLHRRGH 92
                     *******************88 PP
2zf-C2H211.20.0012147169123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H + +
  Lj0g3v0166949.1 147 WKCEKCSKKYAVHSDWKAHAKIC 169
                      58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.4E-76992No hitNo description
PROSITE profilePS5015710.8247092IPR007087Zinc finger, C2H2
SMARTSM003550.117092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355100112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.4E-7142167No hitNo description
SMARTSM00355140147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MMSQEAFSIP SNNTMRSDTL ANHVQDPNPN NPNNPNPNPA KRKRNLPGNP DPDAEVIALS  60
PKSLMATNRF LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RANKDQVRKK VYVCPEKSCV  120
HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVHS DWKAHAKICG TREYKCDCGT  180
LFSRKDSFIT HRAFCDTLAE ESGRITSTIP AALTNFRTNH FTNAQPLKIP QIFPGFHSEF  240
GGSGSEPLRL PPWLDQQVNN SQLHNHPLNF TTKPPSAANF SSSDAVDMFG SQQQETQWLN  300
FRFPAETSFP GNSNNNNNNN LLLLPHGLKQ EEQEENKGDH LSHSHSVQVS SLYLSNHQNQ  360
LQQQTHMGSM TARINDDDHT VVPSFNNIVE VQKLFKQADE NSNLNRLVSL ETSGNNNNNN  420
DLGGGGGYLL NDHPLSMMGN KQELHSSSDN KNQLRDFLGV GVNSISRPFL LQQDFAEFNA  480
METATNQSQY NGHYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35143207367Zinc finger protein JACKDAW
5b3h_F3e-35143207367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196109KLKQRANKDQVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0166949.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027345898.10.0zinc finger protein BALDIBIS-like
RefseqXP_027345899.10.0zinc finger protein BALDIBIS-like
TrEMBLG7JPG11e-175G7JPG1_MEDTR; C2H2 and C2HC zinc finger protein, putative
STRINGGLYMA12G07510.21e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-103C2H2-like zinc finger protein