PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0172009.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WOX
Protein Properties Length: 147aa    MW: 16989.9 Da    PI: 9.4545
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0172009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.42.2e-2286145357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++t+eql++Le+l+   +r+psae++e+++++l    +++ ++V++WFqN++a+e++
  Lj0g3v0172009.1  86 SRWNPTPEQLRALEDLYSGgTRTPSAEQIEHITAQLrrfgKIEGKNVFYWFQNHKARERQ 145
                      7*****************99**************************************97 PP
2Wus_type_Homeobox114.84.1e-3785147365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Le+ly+ G+rtP++e+i++ita+L+++Gkie+kNVfyWFQN+kaRerqk+
    Lj0g3v0172009.1  85 SSRWNPTPEQLRALEDLYSGGTRTPSAEQIEHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 147
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000464.3E-2086145IPR001356Homeobox domain
SuperFamilySSF466891.71E-1286145IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-986145IPR009057Homeodomain-like
CDDcd000868.99E-787147No hitNo description
PROSITE profilePS5007110.68991146IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MWMVGYNEGG EFNMADHSFS GKKTRPFMPM PMASPNNALT TTTSIHGNTF FSQYHHYHHH  60
HQAAILGEQQ SKRDECNDGT PVVVSSRWNP TPEQLRALED LYSGGTRTPS AEQIEHITAQ  120
LRRFGKIEGK NVFYWFQNHK ARERQKR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed during initiation of the shoot apical meristem, when cotyledonary primordia arise at the flanks of the apical embryo domain phase. Confined to the initiating vascular primordium of the cotyledons during heart and torpedo stages, but only weakly expressed during bent cotyledon stage. {ECO:0000269|PubMed:14711878}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0172009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359305.12e-68WUSCHEL-related homeobox 1-like
SwissprotQ6X7K01e-42WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A371EDN62e-65A0A371EDN6_MUCPR; WUSCHEL-related homeobox 1 (Fragment)
STRINGAET055835e-64(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-44WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]