PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0178269.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HSF
Protein Properties Length: 68aa    MW: 7451.17 Da    PI: 3.7498
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0178269.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind31.83.6e-103767232
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES- CS
     HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvld 32
                     Fl+k+y+++ed++++++isw+++g++f+v++
  Lj0g3v0178269.1 37 FLTKTYQLVEDQSIDDVISWNDDGSTFIVWN 67
                     9*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-102868IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.02E-83468IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.3E-73767IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MAPPPPPPPP VEQHNADSYS PAAASSLESQ RSIPTPFLTK TYQLVEDQSI DDVISWNDDG  60
STFIVWNP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.130241e-106cell culture| protoplast
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0178269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438576.17e-26PREDICTED: heat stress transcription factor B-2a-like
RefseqXP_027924957.17e-26heat stress transcription factor B-2a-like
SwissprotQ9SCW42e-18HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0L9VIV62e-24A0A0L9VIV6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TBP52e-24A0A0S3TBP5_PHAAN; Uncharacterized protein
TrEMBLA0A4D6M0Z72e-24A0A4D6M0Z7_VIGUN; Heat shock transcription factor
STRINGXP_007152318.15e-24(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-21heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]