PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0187709.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 500aa    MW: 56719.9 Da    PI: 9.9082
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0187709.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438e-1411102199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+  +    + g l lp+ f+++++g+ +++  ++l+ +++ sWe+    +k+++ ++++kGW+eF+k   L  g  v+F++++ s f   v
  Lj0g3v0187709.1  11 FFKII-TTTCIEAGKLKLPNGFIKKYSGDMPNP--VILKPPDNTSWEIHW--SKHDSDIWFQKGWEEFAKYYSLYHGHLVLFEFKDASHF--GV 97 
                      56665.556666778***********9997776..***************..*******************************9887888..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      ++f+k
  Lj0g3v0187709.1  98 HIFDK 102
                      99997 PP
2B353.15.6e-17241326196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f++v++p++  +++ l ++ +fa ++++kk++  +++l+ ++g +W+v +  + ++    +t+GWk+F+++n+Lk+gD++ F+l++r + +l+ 
  Lj0g3v0187709.1 241 FVSVMKPAYIYRHS-LHVSSQFA-KNSLKKKR--DIILQVLDGSTWTVSY--KLGK----FTAGWKKFASDNKLKVGDVCRFELNKRGSLSLKA 324
                      67788788877776.********.88788555..7***************..6666....9***********************9888777766 PP

                      EE CS
               B3  95 kv 96 
                       +
  Lj0g3v0187709.1 325 LI 326
                      66 PP
3B333.57.4e-11396487398
                      EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      kv++++d   +  r  +  +f++++ +kk +    ++ +  ++ W vkl ++ +  +  l+kGW  F+ + +L +gD++vF+l++++++ + v+
  Lj0g3v0187709.1 396 KVTIQPDRAGNyYRPHVTLTFMKKYLNKK-K---NVMLQFGNNLWPVKLLHSASY-GAKLSKGWALFAGESKLVAGDVCVFELINKEDAVFDVH 484
                      55555555444355677788999994442.3...35566788*******655554.5689************************9999988999 PP

                      EE- CS
               B3  96 vfr 98 
                      +f+
  Lj0g3v0187709.1 485 IFK 487
                      886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-207103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-1910103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.36510103IPR003340B3 DNA binding domain
CDDcd100172.30E-1310101No hitNo description
SMARTSM010191.2E-1011103IPR003340B3 DNA binding domain
PfamPF023622.6E-1111102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-20233323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-18234320IPR015300DNA-binding pseudobarrel domain
CDDcd100174.45E-18239328No hitNo description
PROSITE profilePS5086311.364240330IPR003340B3 DNA binding domain
SMARTSM010192.4E-16241330IPR003340B3 DNA binding domain
PfamPF023621.3E-14241327IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-16387489IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-14388487IPR015300DNA-binding pseudobarrel domain
CDDcd100176.90E-14393487No hitNo description
SMARTSM010194.7E-6394489IPR003340B3 DNA binding domain
PfamPF023626.4E-9409487IPR003340B3 DNA binding domain
PROSITE profilePS5086310.433436489IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MTRNKNSAIC FFKIITTTCI EAGKLKLPNG FIKKYSGDMP NPVILKPPDN TSWEIHWSKH  60
DSDIWFQKGW EEFAKYYSLY HGHLVLFEFK DASHFGVHIF DKSTLEIEYP MIYDNQDEEN  120
NNPDQMSDNS VEILYEIPSW KKTKLKSPIA CPQPSKKLRT RTSKDVGRSP KLQNLSKQVQ  180
TIEGIQSHVT NLEKSTLEPV HNELEDGAGG STECLKRDPL TSKTTKALNQ ARTFKSKNPS  240
FVSVMKPAYI YRHSLHVSSQ FAKNSLKKKR DIILQVLDGS TWTVSYKLGK FTAGWKKFAS  300
DNKLKVGDVC RFELNKRGSL SLKALIFPLA REPHSPQSQV QGDGANWRVQ DTKSKTVTTT  360
SRGGKATQQD SMLINPLTNG ALDEANKFTS ENPCFKVTIQ PDRAGNYYRP HVTLTFMKKY  420
LNKKKNVMLQ FGNNLWPVKL LHSASYGAKL SKGWALFAGE SKLVAGDVCV FELINKEDAV  480
FDVHIFKGHC SYFTHVKCNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1321132719140B3 domain-containing transcription factor VRN1
4i1k_B2e-1321132719140B3 domain-containing transcription factor VRN1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.100521e-150pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0187709.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1356710.0BT135671.1 Lotus japonicus clone JCVI-FLLj-17H11 unknown mRNA.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-30B3 family protein