PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0191789.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 392aa    MW: 43294.3 Da    PI: 8.9772
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0191789.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043153176123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+ Cg+ F  + +L++H+   H
  Lj0g3v0191789.1 153 FPCTACGEIFQKPNLLEQHQAAtH 176
                      89******************8777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.305153181IPR007087Zinc finger, C2H2
PROSITE patternPS000280155176IPR007087Zinc finger, C2H2
SuperFamilySSF563992.49E-15178391No hitNo description
Gene3DG3DSA:3.90.228.101.8E-5184297IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.102.1E-6327391IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MANIATIFNK FLYLPILLIH LGCFIFTTTT ASAAGKQDNR QTQPSKKRRV SPLSQPSSPS  60
HPKFKTQKAL SSSWHFIKHL FSTKSSCKTA TAHSSPQSTS TTARSSQQSL ISLAQPAPLL  120
QDPPRRRQSG SCPESDISAD NNSLFFPLRN DIFPCTACGE IFQKPNLLEQ HQAATHAVSE  180
LVGSDPGHNI VQIIFKSGWP ETRVSPRVLR VLKIHNSPKI LSRFEEYRET VKTKAAARHG  240
GASRRRDERC IADGNELMRF HCSTFLCELG LNGDSSICSQ QFCNICGIIK SGFSPKLDGI  300
STLSTSWRAH VSIPEDIEAE FRFMNVKRAM LVCRVVAGRV GSDSDEAEKA DGGFDSVMSR  360
GESGVYTRLD EEELVVFNPR AVLPCFVIVY SV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0191789.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027337736.10.0uncharacterized protein LOC113851448
TrEMBLG7ZYI50.0G7ZYI5_MEDTR; C2H2-like zinc finger protein
STRINGAES842730.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.15e-99C2H2 family protein