PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0192469.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 190aa    MW: 21443.2 Da    PI: 4.6697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0192469.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.61.5e-16171271101
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvka.eekewyfFskrdkkyatgkrknratk 79 
                      l pG++F+Ptde lv++yLk++v +++l++ ++i+++d++++ePw Lp               k    +e++++f+ +  +    ++   r++ 
  Lj0g3v0192469.1  17 LLPGYKFDPTDEVLVDFYLKRRVFAQPLPF-QIISDFDVFQTEPWGLPGgddvsnlifiladgK--IfNERKCFFYNTMGHGI--ENLDVRVVG 105
                      579***************************.89***************5588888887765432..13667888888887765..4588999** PP

              NAM  80 sgyWkatgkdkevlskkgelvg 101
                      sg W+   k k+v   +++++ 
  Lj0g3v0192469.1 106 SGEWRVMEKGKDVPIPQNKKMA 127
                      *****77776666665444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-1813124IPR003441NAC domain
PROSITE profilePS5100517.1317174IPR003441NAC domain
PfamPF023657.1E-819122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGDLIMTYED KDGRVRLLPG YKFDPTDEVL VDFYLKRRVF AQPLPFQIIS DFDVFQTEPW  60
GLPGGDDVSN LIFILADGKI FNERKCFFYN TMGHGIENLD VRVVGSGEWR VMEKGKDVPI  120
PQNKKMANWA VYRIFQNEDA KEKATGSNGE ISNGGRNTTS IEVIDFNVKR GSFSNLPQMT  180
PSSSEGTESP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0192469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352865.11e-39NAC domain-containing protein 83-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-15NAC domain containing protein 47