PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0195189.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 61aa    MW: 7247.35 Da    PI: 10.2326
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0195189.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.9e-181055148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ T++Ed+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
  Lj0g3v0195189.1 10 RGNITPDEDDLIIRMHSLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 55
                     8999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.73E-16159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-27159IPR009057Homeodomain-like
PROSITE profilePS5129424.994559IPR017930Myb domain
SMARTSM007174.4E-14957IPR001005SANT/Myb domain
PfamPF002492.0E-161055IPR001005SANT/Myb domain
CDDcd001672.43E-121455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MNYLRPDIKR GNITPDEDDL IIRMHSLLGN RWSLIAGRIP GRTDNEIKNY WNTHLCKKLR  60
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1525951108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0195189.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524093.14e-36transcription repressor MYB6
RefseqXP_017405792.13e-36PREDICTED: transcription repressor MYB6-like
RefseqXP_027906642.13e-36transcription repressor MYB6-like
SwissprotQ388502e-29MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A371ETC31e-36A0A371ETC3_MUCPR; Transcription repressor MYB4
STRINGGLYMA03G41965.19e-35(Glycine max)
STRINGXP_007135274.12e-34(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-31myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]