PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0196189.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Trihelix

Protein Properties

Length: 184aa MW: 21051.6 Da PI: 7.7605

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0196189.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.2	3.8e-17	21	105	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ Li+a++e++ +l+rg l+ ++Weev+ ++ ++s+ qC++k+e+l++r++++k++ r ++yf+ ++ Lj0g3v0196189.2 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVaarcgyDFAHPSKSALQCRHKIEKLRQRHRAEKHRPATR------PWQYFSLMD 105 ***********************************8555553333479******************999975......599998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-17	20	107	No hit	No description
PROSITE profile	PS50090	6.179	20	83	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MATPPPPATT SAVKKPQPIP WTHQETVNLI RAYQEKWYSL KRGPLRSNQW EEVAVVVAAR 60 CGYDFAHPSK SALQCRHKIE KLRQRHRAEK HRPATRPWQY FSLMDDLERG PLPISAHPLA 120 SLPPGVDEDE EDDEIEHGGE GDVHDHDDRV NYMKSKSVNY ILKQRSAPSA INATKNRAAF 180 NDWE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.11237	0.0	pod

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0196189.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015949898.1	6e-70	uncharacterized protein LOC107474774
Refseq	XP_016183654.1	6e-70	uncharacterized protein LOC107625520
Refseq	XP_025633345.1	6e-70	uncharacterized protein LOC112727695
Refseq	XP_025650922.1	6e-70	uncharacterized protein LOC112747105
TrEMBL	A0A445ED63	2e-70	A0A445ED63_ARAHY; Uncharacterized protein
STRING	GLYMA16G14040.2	7e-67	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	4e-30	Trihelix family protein